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first off, you are inputing an analog signal from your decks to your hifi reciever. most hifi recievers will play back digital content, but wont do analog-digital conversion and vise versa.
Your best bet is to connect your minidisc deck directly to your mixer's record output if it has one. If it doesnt, use a line output off the amp (like the tape record out) to the minidisc deck, and record with that using a RCA cable. I'd avoid digital (toslink or coaxial S/PDIF) all together unless you are using a quality outboard A/D converter behind the mixer.
personally, you would be even better off investing in a quality 24/96 soundboard for your PC (not soundblaster sh*t.. a pro audio board ala echo audio, maudio, etc) and recording directly to your hard disk in an uncompressed format (or lossless compression method like ogg)
Minidiscs can leave artifacts and/or color the sound, and are a bad choice for a first generation medium. Decent for practice, though.. but still has a mediocre dynamic range and uses a lossy compression scheme - might as well use MP3s :P
Plus, the A/D converters in most minidisc decks are quite horrid 
-mer
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