So I have a high pass filter on the breakdown, I went ahead and put the effect on the master channel. There is only 1 track that I want without the autofilter how do I do this if the effect is on the master channel?

you would have to group all the channels, except the one you want the effect on, to a group channel and put the effect on that group channel

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How do I group the channels?

Well, Create a new audio track in your arrangement and name it "supergroup", set the audio out to "master" on that track (if it isn't already)

Then all your other audio tracks that you want the effect on, change the output from "master" to "supergroup".

Then take the effect off the master channel, and put it on your new supergroup.

Voila!